`bokeh.charts.Chord` seems to hide important lines


I am using bokeh.charts.Chord for the first time with my own data. I am trying to understand the output. I still am cleaning things up but I am seeing some strange behavior.

Notice in the attached color figure, ‘raw.png’, that there is a large region empty region on the right labeled fc residue 236. There are actually a number of connections here, otherwise it would not be so wide. I do not see any connections unless I pan/zoom the figure. The b/w image, ‘drag_crop.png’ shows this.

It seems a bit like the fc residue 236 node has lots of connections, just not many to the same node, though this does not really explain why it is such a wide region.

Thanks for any tips.


Steven Howell
[email protected]