Bokeh Server - No module named pyensembl

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1

My script contains:

import pyensembl

I can execute my script like this:
python3 myscript.py

But when I do:

bokeh serve myscript.py

Then I get the error message:

Error running application handler <bokeh.application.handlers.script.ScriptHandler object at 0x107546be0>: No module named ‘pyensembl’

Why is that? How do I get Bokeh Server to find pyensembl? Thanks!

2

I had done pip3 install pyensembl. I just did pip install pyensembl and it worked.

···

On Friday, 24 March 2017 16:48:29 UTC, Tommy Carstensen wrote:

My script contains:

import pyensembl

I can execute my script like this:
python3 myscript.py

But when I do:

bokeh serve myscript.py

Then I get the error message:

Error running application handler <bokeh.application.handlers.script.ScriptHandler object at 0x107546be0>: No module named ‘pyensembl’

Why is that? How do I get Bokeh Server to find pyensembl? Thanks!

3

Hi,

it sounds like you have multiple conda env or virtual envs, and you are running the bokeh executable out of a different env than you think you are (so, this is a system path issue).

Thanks,

Bryan

···

On Mar 24, 2017, at 11:53, Tommy Carstensen <[email protected]> wrote:

I had done pip3 install pyensembl. I just did pip install pyensembl and it worked.

On Friday, 24 March 2017 16:48:29 UTC, Tommy Carstensen wrote:
My script contains:
import pyensembl

I can execute my script like this:
python3 myscript.py

But when I do:
bokeh serve myscript.py

Then I get the error message:
Error running application handler <bokeh.application.handlers.script.ScriptHandler object at 0x107546be0>: No module named 'pyensembl'

Why is that? How do I get Bokeh Server to find pyensembl? Thanks!

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4

I was using two different bokeh executables. One I had gotten with conda install bokeh. The other with pip3 install bokeh. I just made the same mistake again on another machine. All sorted. Thanks!

···

On Fri, 24 Mar 2017 at 17:21 Bryan Van de ven [email protected] wrote:

Hi,

it sounds like you have multiple conda env or virtual envs, and you are running the bokeh executable out of a different env than you think you are (so, this is a system path issue).

Thanks,

Bryan

On Mar 24, 2017, at 11:53, Tommy Carstensen [email protected] wrote:

I had done pip3 install pyensembl. I just did pip install pyensembl and it worked.

On Friday, 24 March 2017 16:48:29 UTC, Tommy Carstensen wrote:

My script contains:

import pyensembl

I can execute my script like this:

python3 myscript.py

But when I do:

bokeh serve myscript.py

Then I get the error message:

Error running application handler <bokeh.application.handlers.script.ScriptHandler object at 0x107546be0>: No module named ‘pyensembl’

Why is that? How do I get Bokeh Server to find pyensembl? Thanks!

–

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To unsubscribe from this group and stop receiving emails from it, send an email to [email protected].

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