Raspberry Pi2 Bokeh install issue on Raspbian Jessie

Community Support
1

Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command “pip install bokeh” but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include “Python.h”

^

compilation terminated.

error: command ‘arm-linux-gnueabihf-gcc’ failed with exit status 1

···

Cleaning up…

Command /usr/bin/python -c “import setuptools, tokenize;file=’/tmp/pip-build-wE7mgl/pandas/setup.py’;exec(compile(getattr(tokenize, ‘open’, open)(file).read().replace(’\r\n’, ‘\n’), file, ‘exec’))” install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas

Storing debug log for failure in /root/.pip/pip.log

root@raspberrypi:~#

BR

2

Search for python-dev package on apt-get

2015 lapkr. 5 05:27 popiet [email protected] rašė:

···

Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command “pip install bokeh” but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include “Python.h”

^

compilation terminated.

error: command ‘arm-linux-gnueabihf-gcc’ failed with exit status 1

Cleaning up…

Command /usr/bin/python -c “import setuptools, tokenize;file=‘/tmp/pip-build-wE7mgl/pandas/setup.py’;exec(compile(getattr(tokenize, ‘open’, open)(file).read().replace(‘\r\n’, ‘\n’), file, ‘exec’))” install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas

Storing debug log for failure in /root/.pip/pip.log

root@raspberrypi:~#

BR

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3

Parts of Bokeh depend on Pandas, and pip tries to build any necessary dependencies. So it is trying to build pandas from the source, but you don't have the necessary development environment/tools. There are a few options:

* Not all of Bokeh requires pandas (basically just bokeh.charts) I think there is a way to tell pip to ignore some or all dependencies

* Try to locate binary "wheels" for RasbPi that pip can install without needing to build things from source

* You might have better luck with conda: https://www.continuum.io/content/conda-support-raspberry-pi-2-and-power8-le

RasbPi is not a platform we officially support or test on, but I would certainly be happy to see it running there. Please let us know how it goes.

Thanks,

Bryan

···

On Nov 5, 2015, at 9:25 AM, [email protected] wrote:

Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command "pip install bokeh" but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include "Python.h"

                    ^

compilation terminated.

error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1

----------------------------------------
Cleaning up...
Command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-wE7mgl/pandas/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas
Storing debug log for failure in /root/.pip/pip.log
root@raspberrypi:~#

BR

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4

Of course, this is one more option as well. This will install the development libs so that the pip build might work.

···

On Nov 5, 2015, at 9:29 AM, Ignas Brašiškis <[email protected]> wrote:

Search for python-dev package on apt-get

2015 lapkr. 5 05:27 popiet <[email protected]> rašė:
Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command "pip install bokeh" but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include "Python.h"

                    ^

compilation terminated.

error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1

----------------------------------------
Cleaning up...
Command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-wE7mgl/pandas/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas
Storing debug log for failure in /root/.pip/pip.log
root@raspberrypi:~#

BR

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5

pip install --no-deps bokeh

However, you would need to install the other dependencies by hand, or put
them into a requirements.txt file..

        'Flask>=0.10.1',
        'Jinja2>=2.7',
        'MarkupSafe>=0.18',
        'Werkzeug>=0.9.1',
        'greenlet>=0.4.1',
        'itsdangerous>=0.21',
        'python-dateutil>=2.1',
        'requests>=1.2.3',
        'six>=1.5.2',
        'pygments>=1.6',
        'pystache>=0.5.3',
        'markdown>=2.3.1',
        'PyYAML>=3.10',
        'pyzmq>=14.3.1',
        'tornado>=4.0.1',
        'colorama>=0.2.7'

-Peter

···

On Thu, Nov 5, 2015 at 9:32 AM, Bryan Van de Ven <[email protected]> wrote:

Parts of Bokeh depend on Pandas, and pip tries to build any necessary
dependencies. So it is trying to build pandas from the source, but you
don't have the necessary development environment/tools. There are a few
options:

* Not all of Bokeh requires pandas (basically just bokeh.charts) I think
there is a way to tell pip to ignore some or all dependencies

6

Thanks a lot for your answers! I appreciated your help.

I am new to Linux, but i succeeded by installing python-dev package on apt-get

After that i installed booked for Python 3 by using pip3 install bokeh

I have just tested the verification of Bokeh and it seems to work in stand alone

-Thomas

···

Den torsdag den 5. november 2015 kl. 16.29.18 UTC+1 skrev Ignas Brašiškis:

Search for python-dev package on apt-get

2015 lapkr. 5 05:27 popiet [email protected] rašė:

Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command “pip install bokeh” but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include “Python.h”

^

compilation terminated.

error: command ‘arm-linux-gnueabihf-gcc’ failed with exit status 1

Cleaning up…

Command /usr/bin/python -c “import setuptools, tokenize;file=‘/tmp/pip-build-wE7mgl/pandas/setup.py’;exec(compile(getattr(tokenize, ‘open’, open)(file).read().replace(‘\r\n’, ‘\n’), file, ‘exec’))” install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas

Storing debug log for failure in /root/.pip/pip.log

root@raspberrypi:~#

BR

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For more options, visit https://groups.google.com/a/continuum.io/d/optout.

7

The exact commands used was

pip3 install bokeh

apt-get install python.dev

···

Den fredag den 6. november 2015 kl. 16.38.58 UTC+1 skrev Thomas T:

Thanks a lot for your answers! I appreciated your help.

I am new to Linux, but i succeeded by installing python-dev package on apt-get

After that i installed booked for Python 3 by using pip3 install bokeh

I have just tested the verification of Bokeh and it seems to work in stand alone

-Thomas

Den torsdag den 5. november 2015 kl. 16.29.18 UTC+1 skrev Ignas Brašiškis:

Search for python-dev package on apt-get

2015 lapkr. 5 05:27 popiet [email protected] rašė:

Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command “pip install bokeh” but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include “Python.h”

^

compilation terminated.

error: command ‘arm-linux-gnueabihf-gcc’ failed with exit status 1

Cleaning up…

Command /usr/bin/python -c “import setuptools, tokenize;file=‘/tmp/pip-build-wE7mgl/pandas/setup.py’;exec(compile(getattr(tokenize, ‘open’, open)(file).read().replace(‘\r\n’, ‘\n’), file, ‘exec’))” install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas

Storing debug log for failure in /root/.pip/pip.log

root@raspberrypi:~#

BR

–

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For more options, visit https://groups.google.com/a/continuum.io/d/optout.

8

Awesome! If you make something cool that you can also share we'd love to tweet about it or show it on the YouTube channel!

Bryan

···

On Nov 6, 2015, at 9:42 AM, Thomas T <[email protected]> wrote:

The exact commands used was

pip3 install bokeh

apt-get install python.dev

Den fredag den 6. november 2015 kl. 16.38.58 UTC+1 skrev Thomas T:
Thanks a lot for your answers! I appreciated your help.

I am new to Linux, but i succeeded by installing python-dev package on apt-get

After that i installed booked for Python 3 by using pip3 install bokeh

I have just tested the verification of Bokeh and it seems to work in stand alone

-Thomas

Den torsdag den 5. november 2015 kl. 16.29.18 UTC+1 skrev Ignas Brašiškis:
Search for python-dev package on apt-get

2015 lapkr. 5 05:27 popiet <[email protected]> rašė:
Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command "pip install bokeh" but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include "Python.h"

                    ^

compilation terminated.

error: command 'arm-linux-gnueabihf-gcc' failed with exit status 1

----------------------------------------
Cleaning up...
Command /usr/bin/python -c "import setuptools, tokenize;__file__='/tmp/pip-build-wE7mgl/pandas/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas
Storing debug log for failure in /root/.pip/pip.log
root@raspberrypi:~#

BR

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For more options, visit https://groups.google.com/a/continuum.io/d/optout\.

9

Thanks, i will remember that.
Unfortunately, when i tried to verify the installation, i couldn’t exchange output_file with output_network. I got the error in the Python Shell:

root_url should end with a /, adding one

Using saved session configuration for test.html

To override, pass ‘load_from_config=False’ to Session

Traceback (most recent call last):

File “/home/pi/Desktop/FirstBokehTest.py”, line 2, in

output_notebook(“test.html”)

File “/usr/local/lib/python3.4/dist-packages/bokeh/io.py”, line 133, in output_notebook

url=url, docname=docname, session=session, name=name

File “/usr/local/lib/python3.4/dist-packages/bokeh/state.py”, line 182, in output_notebook

self.output_server(docname, url=url, session=session, name=name)

File “/usr/local/lib/python3.4/dist-packages/bokeh/state.py”, line 222, in output_server

self._session.use_doc(docname)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 455, in use_doc

self.docid = self.find_doc(name)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 418, in find_doc

docs = self.userinfo.get(‘docs’)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 373, in userinfo

self._userinfo = self.get_json(url)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 351, in get_json

return self.execute_json(‘get’, url, headers=headers, **kwargs)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 334, in execute_json

resp = self.execute(method, url, headers=headers, **kwargs)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 316, in execute

resp = func(url, headers=headers, **kwargs)

File “/usr/lib/python3/dist-packages/requests/sessions.py”, line 469, in get

return self.request(‘GET’, url, **kwargs)

File “/usr/lib/python3/dist-packages/requests/sessions.py”, line 443, in request

prep = self.prepare_request(req)

File “/usr/lib/python3/dist-packages/requests/sessions.py”, line 374, in prepare_request

hooks=merge_hooks(request.hooks, self.hooks),

File “/usr/lib/python3/dist-packages/requests/models.py”, line 304, in prepare

self.prepare_url(url, params)

File “/usr/lib/python3/dist-packages/requests/models.py”, line 358, in prepare_url

“Perhaps you meant http://{0}?”.format(url))

requests.exceptions.MissingSchema: Invalid URL ‘test.html/bokeh/userinfo/’: No schema supplied. Perhaps you meant http://test.html/bokeh/userinfo/?

It seems to me like it is related to the IPython?

···

Den fredag den 6. november 2015 kl. 17.13.30 UTC+1 skrev Bryan Van de ven:

Awesome! If you make something cool that you can also share we’d love to tweet about it or show it on the YouTube channel!

Bryan

On Nov 6, 2015, at 9:42 AM, Thomas T [email protected] wrote:

The exact commands used was

pip3 install bokeh

apt-get install python.dev

Den fredag den 6. november 2015 kl. 16.38.58 UTC+1 skrev Thomas T:

Thanks a lot for your answers! I appreciated your help.

I am new to Linux, but i succeeded by installing python-dev package on apt-get

After that i installed booked for Python 3 by using pip3 install bokeh

I have just tested the verification of Bokeh and it seems to work in stand alone

-Thomas

Den torsdag den 5. november 2015 kl. 16.29.18 UTC+1 skrev Ignas Brašiškis:

Search for python-dev package on apt-get

2015 lapkr. 5 05:27 popiet [email protected] rašė:

Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command “pip install bokeh” but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include “Python.h”

                ^

compilation terminated.

error: command ‘arm-linux-gnueabihf-gcc’ failed with exit status 1

Cleaning up…

Command /usr/bin/python -c “import setuptools, tokenize;file=‘/tmp/pip-build-wE7mgl/pandas/setup.py’;exec(compile(getattr(tokenize, ‘open’, open)(file).read().replace(‘\r\n’, ‘\n’), file, ‘exec’))” install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas

Storing debug log for failure in /root/.pip/pip.log

root@raspberrypi:~#

BR

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For more options, visit https://groups.google.com/a/continuum.io/d/optout.

10

Anyone have any input on this ?

BR

···

Den fredag den 6. november 2015 kl. 19.44.23 UTC+1 skrev Thomas T:

Thanks, i will remember that.
Unfortunately, when i tried to verify the installation, i couldn’t exchange output_file with output_network. I got the error in the Python Shell:

root_url should end with a /, adding one

Using saved session configuration for test.html

To override, pass ‘load_from_config=False’ to Session

Traceback (most recent call last):

File “/home/pi/Desktop/FirstBokehTest.py”, line 2, in

output_notebook(“test.html”)

File “/usr/local/lib/python3.4/dist-packages/bokeh/io.py”, line 133, in output_notebook

url=url, docname=docname, session=session, name=name

File “/usr/local/lib/python3.4/dist-packages/bokeh/state.py”, line 182, in output_notebook

self.output_server(docname, url=url, session=session, name=name)

File “/usr/local/lib/python3.4/dist-packages/bokeh/state.py”, line 222, in output_server

self._session.use_doc(docname)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 455, in use_doc

self.docid = self.find_doc(name)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 418, in find_doc

docs = self.userinfo.get(‘docs’)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 373, in userinfo

self._userinfo = self.get_json(url)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 351, in get_json

return self.execute_json(‘get’, url, headers=headers, **kwargs)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 334, in execute_json

resp = self.execute(method, url, headers=headers, **kwargs)

File “/usr/local/lib/python3.4/dist-packages/bokeh/session.py”, line 316, in execute

resp = func(url, headers=headers, **kwargs)

File “/usr/lib/python3/dist-packages/requests/sessions.py”, line 469, in get

return self.request(‘GET’, url, **kwargs)

File “/usr/lib/python3/dist-packages/requests/sessions.py”, line 443, in request

prep = self.prepare_request(req)

File “/usr/lib/python3/dist-packages/requests/sessions.py”, line 374, in prepare_request

hooks=merge_hooks(request.hooks, self.hooks),

File “/usr/lib/python3/dist-packages/requests/models.py”, line 304, in prepare

self.prepare_url(url, params)

File “/usr/lib/python3/dist-packages/requests/models.py”, line 358, in prepare_url

“Perhaps you meant http://{0}?”.format(url))

requests.exceptions.MissingSchema: Invalid URL ‘test.html/bokeh/userinfo/’: No schema supplied. Perhaps you meant http://test.html/bokeh/userinfo/?

It seems to me like it is related to the IPython?

Den fredag den 6. november 2015 kl. 17.13.30 UTC+1 skrev Bryan Van de ven:

Awesome! If you make something cool that you can also share we’d love to tweet about it or show it on the YouTube channel!

Bryan

On Nov 6, 2015, at 9:42 AM, Thomas T [email protected] wrote:

The exact commands used was

pip3 install bokeh

apt-get install python.dev

Den fredag den 6. november 2015 kl. 16.38.58 UTC+1 skrev Thomas T:

Thanks a lot for your answers! I appreciated your help.

I am new to Linux, but i succeeded by installing python-dev package on apt-get

After that i installed booked for Python 3 by using pip3 install bokeh

I have just tested the verification of Bokeh and it seems to work in stand alone

-Thomas

Den torsdag den 5. november 2015 kl. 16.29.18 UTC+1 skrev Ignas Brašiškis:

Search for python-dev package on apt-get

2015 lapkr. 5 05:27 popiet [email protected] rašė:

Hello

I have issues on installing Bokeh on Raspberry Pi2 Raspbian Jessie OS.

I have tried the command “pip install bokeh” but it gives an error saying:

pandas/index.c:4:20: fatal error: Python.h: No such file or directory

#include “Python.h”

                ^

compilation terminated.

error: command ‘arm-linux-gnueabihf-gcc’ failed with exit status 1

Cleaning up…

Command /usr/bin/python -c “import setuptools, tokenize;file=‘/tmp/pip-build-wE7mgl/pandas/setup.py’;exec(compile(getattr(tokenize, ‘open’, open)(file).read().replace(‘\r\n’, ‘\n’), file, ‘exec’))” install --record /tmp/pip-L_IcN6-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip-build-wE7mgl/pandas

Storing debug log for failure in /root/.pip/pip.log

root@raspberrypi:~#

BR

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