This is to support a funding proposal to be submitted later this year. If you are aware of any citations or mentions of Bokeh in academic papers (or can help search for these) please comment below.
We used bokeh in a paper for visualising high resolution Mass Spectrometry data (analytical chemistry).
A quick search finds a couple more papers:
https://pubs.geoscienceworld.org/ssa/srl/article-abstract/89/2A/668/528148
And this thesis - "Mirai Bot Scanner Summation Prototype" by Charles V. Frank Jr.
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We’ve implemented a Bokeh into our software and cited it here: ORIGAMI: A software suite for activated ion mobility mass spectrometry (aIM-MS) applied to multimeric protein assemblies - ScienceDirect
We’ve also used Bokeh in a number of other publications, although without explicitly citing it:
https://pubs.acs.org/doi/10.1021/jacs.8b13483
https://pubs.rsc.org/en/content/articlelanding/2019/sc/c8sc05029e#!divAbstract
https://chemrxiv.org/articles/Using_Collision_Cross_Section_Distributions_to_Assess_the_Distribution_of_Collision_Cross_Section_Values/8241395
I am in progress to publish an article. Do you have a reference example on how properly cite Bokeh? (journal article, etc.)
That old site is almost surely going away soon, so I will leave it here explicitly for posterity 
Bokeh Development Team (2018). Bokeh: Python library for interactive visualization
URL http://www.bokeh.pydata.org.
A BibTeX entry for LaTeX users is:
@Manual{,
title = {Bokeh: Python library for interactive visualization},
author = {{Bokeh Development Team}},
year = {2018},
url = {https://bokeh.pydata.org/en/latest/},
}
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Can this be added somewhere on the new site too?
Can this be added somewhere on the new site too?
It’s on my TODO list 
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@GenevieveBuckley see https://bokeh.org/citation/ I am not a BibTex expert (or even user at all at this point) so it would be great if someone who is could double check that syntax.